Key features

BrainGlobe + Structure highlighting

Supports a large range of Brain Atlases and associated structures thanks to BrainGlobe Atlas API.

Stereotaxic frame module - Armature inheritance

Arbitrary stereotaxic frames can be easily modelled using a flexible dictionary-based editor.

Stereotaxic frame elements (referred to as Armatures) can be associated in a hierarchical tree structure, allowing operations such as mesh boolean operations or acoustic simulations to be performed in any spatial reference frame.

Anatomical calibration module

3D objects can inherit from a anatomically calibrated coordinate frame whose scale and orientation can be simply matched to experimental conditions using anatomical landmarks such as Lambda and Bregma for rodents.

Trimesh boolean operations

Integration with the Python library trimesh allows for the manipulation of meshes. This feature greatly simplifies the definition of complex domains in the context of acoustic simulations.

k-Wave acoustic simulation

Supports axisymmetric simulations in homogeneous domains and 3D simulations in complex mediums derived from mesh objects.